19
Nov

Although I have a post before, it is too complicated.

Here is the steps to have a nice figure.

  1. Get the PDB file and open it in Pymol or Macpymol.
  2. Position and color the structure and residues in the way you want. How to do it? Check PymolWiki or the Pymol manual.
  3. Run the following commands.
    bg_color white
    set ray_trace_fog,0
    set ray_shadows,0
    set antialias,1
    png yournicestrucutre.png
  4. Find the figure in your current directory or your home directory.

Happy Pymol!

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